C F G L M N P R S T V

P

pileup2call(String[], HashMap<String, String>, String) - Static method in class net.sf.varscan.VarScan

Calls SNPs from a pileup file

ProcessSomatic - Class in net.sf.varscan

A class for processing VarScan output by somatic status and confidence

ProcessSomatic(String[]) - Constructor for class net.sf.varscan.ProcessSomatic

processSomatic(String[], HashMap<String, String>) - Static method in class net.sf.varscan.VarScan

Splits VarScan output according to somatic status and confidence