C F G L M N P R S T V

F

filter(String[], HashMap<String, String>) - Static method in class net.sf.varscan.VarScan

Filters variants by coverage, significance, frequency, etc.

FilterSomatic - Class in net.sf.varscan

A class for filtering VarScan variant predictions

FilterSomatic(String[]) - Constructor for class net.sf.varscan.FilterSomatic

FilterVariants - Class in net.sf.varscan

A class for filtering VarScan variant predictions

FilterVariants(String[]) - Constructor for class net.sf.varscan.FilterVariants

FishersExact - Class in net.sf.varscan

A statistical class for performing Fisher's exact test.

FishersExact(int) - Constructor for class net.sf.varscan.FishersExact

constructor for FisherExact table

FpFilter - Class in net.sf.varscan

A class for applying the false-positive filter to VarScan variant calls

FpFilter(String[]) - Constructor for class net.sf.varscan.FpFilter

fpfilter(String[], HashMap<String, String>) - Static method in class net.sf.varscan.VarScan

Applies false positive filter using bam-readcount information